Abstract: We introduce a skeletal graph for topological 3D shape representation using Morse theory. The proposed skeletonization algorithm encodes a 3D shape into a topological Reeb graph using a normalized mixture distance function. We also propose a novel graph matching algorithm by comparing the relative shortest paths between the skeleton endpoints. Experimental results demonstrate the feasibility of the proposed topological Reeb graph as a shape signature for 3D object matching and retrieval.